Running Tool 3

In order to run Tool 3 you need to enter two commands in the Terminal window. The Terminal is the black window within the right side of the MobaXterm window.

First enter this command:

cd ~/genome_tools/Tool_3

Then enter this command. Replace aaa with your chosen database:

nextflow run tool_3.nf --runID 'aaa'

Example

nextflow run miniApp3.nf --runID 'all_MTD1'

Info

If you do not include --runID 'aaa' your output folder will be named not_specified.

You may want to record which strains you submit to each job in a spreadsheet.