Loading your query genomes

The genomes you wish to query must be saved in the input folder, input_tool1. Tool 1 screens all genomes in this folder. Therefore, if there are files remaining in this folder from a previous run these must be deleted if you do not wish to screen them.

The genome assembly files for all the sequenced strains are saved in the LIBRARY folder. Copy the files for the genomes you wish to screen from the LIBRARY Folder to the input_tool1 folder.

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